Scaffold Ga0233428_1027563

Overview

Basic Information

• Taxon OID: 3300022888
• Scaffold ID: Ga0233428_1027563
• Source Dataset Name: Seawater microbial communities from Saanich Inlet, British Columbia, Canada - SI_118_April2016_120_MG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Restricted
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Note: The use of this dataset is restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of the sequences below requires obtaining a license from the dataset's corresponding author(s).

Scaffold Components

• Scaffold Length (bps): 2618
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (50.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Inlet → Unclassified → Seawater → Methane Metabolizing Microbial Communities From Different Methane-Rich Environments From Various Locations

Source Dataset Sampling Location

• Location Name: Canada: British Columbia
• Coordinates
  • Lat. (^o): 48.5847
  • Long. (^o): -123.5008
  • Depth (m): 120

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006364	Metagenome / Metatranscriptome	375	Y
F007608	Metagenome / Metatranscriptome	348	Y
F017906	Metagenome	238	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0233428_10275633	F006364	GAG	MEVELDNEVRKMRIINYLDYMDDRALQDITVALYNLSKRRQEISNKKQMEQVDETGE
Ga0233428_10275634	F007608	AGCAGG	MRQENKYEKLPNSMYPKVRQQVVDRIATFEKVLEDHAAAQKESLKMIYEQLEEAKNDLKYLDEVN
Ga0233428_10275637	F017906	N/A	LAAHINNNLLDTCEIEEGKRSQFDIFRSGKLFLSKETLGRFPTKEDVDDMIEQLESFPE