Scaffold Ga0233428_1007950

Overview

Basic Information

• Taxon OID: 3300022888
• Scaffold ID: Ga0233428_1007950
• Source Dataset Name: Seawater microbial communities from Saanich Inlet, British Columbia, Canada - SI_118_April2016_120_MG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Restricted
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Note: The use of this dataset is restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of the sequences below requires obtaining a license from the dataset's corresponding author(s).

Scaffold Components

• Scaffold Length (bps): 6702
• Total Scaffold Genes: 16
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (62.50%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Inlet → Unclassified → Seawater → Methane Metabolizing Microbial Communities From Different Methane-Rich Environments From Various Locations

Source Dataset Sampling Location

• Location Name: Canada: British Columbia
• Coordinates
  • Lat. (^o): 48.5847
  • Long. (^o): -123.5008
  • Depth (m): 120

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002874	Metagenome / Metatranscriptome	524	Y
F008914	Metagenome	326	Y
F009992	Metagenome / Metatranscriptome	310	Y
F012919	Metagenome	276	Y
F025857	Metagenome / Metatranscriptome	200	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0233428_100795013	F008914	AGGA	MEREAIIEETRKWVRSWEAEQREMVLWILEEEVRHDKLMDFMHEDGGKTTPEKLN
Ga0233428_100795015	F009992	N/A	MNDDVPHDIGYVLGNGPSRDRSRTRYEGVTYGCNSIHTEMGVDVLVCMDTWYQFEVIASGYPAKHKCLFGGYNPIPIDIPPESLNPPHYDIHYYNPKDREFADNWYYYATSAADYEKAKKENYALSYWKPDCGYVCYIPEGYKIKELDYGVIPIGDLRPPSGAYALQEALKNGHDRIEVFGFDSIAGVFSTTSTIAFKEHDSPNDIIEDRMDKWITYYKTVTEQYEEIEVIWHTKED
Ga0233428_10079502	F012919	GGAG	MKISRKKLNLEIAKYLHRGGKITKLPDGPNYRFQPYGARVTPGDPIVDLTITDTPTTQQQIKYVEENSL
Ga0233428_10079504	F025857	GAG	MTLHRVAPGCFFTSEEDTPINAIVGKKTSVPTNTPKPYYRTSELDEIPDNFAERMRKFKRAEVRTEEREIITPNGFAVSIAFNKGAYMVIPKEDL
Ga0233428_10079505	F002874	N/A	MEEKIDLSLNRSLPELESSYWEFLEATEGEDSSEWSSSVQVDLSALEGYLMKMDLL