NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0233428_1006076

Scaffold Ga0233428_1006076


Overview

Basic Information
Taxon OID3300022888 Open in IMG/M
Scaffold IDGa0233428_1006076 Open in IMG/M
Source Dataset NameSeawater microbial communities from Saanich Inlet, British Columbia, Canada - SI_118_April2016_120_MG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyRestricted
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Note: The use of this dataset is restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of the sequences below requires obtaining a license from the dataset's corresponding author(s).


Scaffold Components
Scaffold Length (bps)8418
Total Scaffold Genes19 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)15 (78.95%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Inlet → Unclassified → Seawater → Methane Metabolizing Microbial Communities From Different Methane-Rich Environments From Various Locations

Source Dataset Sampling Location
Location NameCanada: British Columbia
CoordinatesLat. (o)48.5847Long. (o)-123.5008Alt. (m)Depth (m)120
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005571Metagenome / Metatranscriptome396Y
F006609Metagenome369Y
F018265Metagenome / Metatranscriptome236Y
F046020Metagenome152N
F051476Metagenome / Metatranscriptome144N

Sequences

Protein IDFamilyRBSSequence
Ga0233428_10060761F051476GAGMTHWKVKLIIKDKLHKAELFEKLSDARLWAMKEAKLAVSHTMFNKTDIVADITSHEFA
Ga0233428_100607611F006609AGGMENDLLKRLIAIIARFDQGLTEAKGGEGIDKPAIREAKLILSSDDNTSFVYDLNHNDAAEVVGQFSLFKKGEDDIVTPFPITSFIQEGKIEGIDTKDILLN
Ga0233428_100607615F005571N/AMAQTIKSLEERIVNLTKVSTDNVQTTVEAELRQLKMESGIPLQATVVLAKEDNFQFTMDWDATMSKFSTTIDGIKWYSDFDYSLYSPKLWETGATARASRRGRNSPI
Ga0233428_10060764F018265GAGMSMEKYTLRAVSITQNILELQKVNRELVTVRKIVTELEQRKMELISF
Ga0233428_10060768F046020AGGMWASIILFTFSLNAQIDQHFKSKELCWEFYEKHPLLYRQIDEAFPKDYYVRLYNSDEHGLVWITCNKLSDLRGNDITRFPVNVPLPTPK
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