Scaffold Ga0247786_1005171

Overview

Basic Information

• Taxon OID: 3300022883
• Scaffold ID: Ga0247786_1005171
• Source Dataset Name: Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S066-202C-4
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2423
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (75.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil → Soil Microbial Communities From Arlington Agricultural Research Station In Wisconsin And Kellogg Biological Station In Michigan, Replicating The Bioenergy Cropping Systems Trials (Bcsts)

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.3
  • Long. (^o): -89.38
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009690	Metagenome / Metatranscriptome	314	Y
F038662	Metagenome / Metatranscriptome	165	Y
F051177	Metagenome / Metatranscriptome	144	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0247786_10051712	F009690	GGAGG	MPMVPAGHKTLVRYPDGTSKVITLYVRPAEGQVIAHGWEVRSVEAGEQDDAGGPTEYRISVARPASEGTSGTADPLDPR
Ga0247786_10051714	F051177	GAG	MLEFGVEVTTDELVALERALRGLETDDARAAATKAHRTPVVLTVKERDAVLSALRIVLGDPTTADNRWEGLARLAAKLEQEQETAVDEPPPARRTRATKS
Ga0247786_10051716	F038662	N/A	MADRREELRVELAGLLAEHEPTLTGDERDQLVRLEEGYGWRPGRRPARPDARIAAFLDLFDRAEQEELTYRTLETGTVDELRDAFRRGLSRL