Scaffold Ga0224545_1005627

Overview

Basic Information

• Taxon OID: 3300022881
• Scaffold ID: Ga0224545_1005627
• Source Dataset Name: Peat soil microbial communities from Stordalen Mire, Sweden - 717 P1 20-24
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2038
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil → Peatland Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location

• Location Name: Sweden: Norrbotten County, Stordalen Mire
• Coordinates
  • Lat. (^o): 68.3533
  • Long. (^o): 19.0471
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010566	Metagenome / Metatranscriptome	302	Y
F031079	Metagenome / Metatranscriptome	183	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0224545_10056275	F031079	AGGGGG	MSTSGIVGEEIAKQAALASVALQDISGAGPNAGHLLPRAVLAMLGPYSAAKFFAERVLQSEAFNVELVQALYSKMLPLERMVDDVLVAARKRGYFDDPDAAEPLRWLETCNEQVKDCMVALESMLDPQLEDVMAAAMGEHQRGETVPLDSIL
Ga0224545_10056276	F010566	N/A	VGSGAYQNLGEVLDQAFEIIREQLDLEDWMFEQREAIAAHIEKGFGQAERGELLDGDAAVEMFRQQRAERMKPQG