Scaffold Ga0224545_1000189

Overview

Basic Information

• Taxon OID: 3300022881
• Scaffold ID: Ga0224545_1000189
• Source Dataset Name: Peat soil microbial communities from Stordalen Mire, Sweden - 717 P1 20-24
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 12747
• Total Scaffold Genes: 21
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 17 (80.95%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil → Peatland Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location

• Location Name: Sweden: Norrbotten County, Stordalen Mire
• Coordinates
  • Lat. (^o): 68.3533
  • Long. (^o): 19.0471
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000281	Metagenome / Metatranscriptome	1382	Y
F000540	Metagenome / Metatranscriptome	1043	Y
F001851	Metagenome / Metatranscriptome	626	Y
F023459	Metagenome / Metatranscriptome	210	Y
F056257	Metagenome / Metatranscriptome	137	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0224545_100018912	F056257	N/A	MGKLNLHGEPVADYVRHSTDSGEYCEVTYRLMSDGVLLKLKTWGRHREARPKQRAYKSGWKIAKVTPEIKANPDLLLTRGFQKKQRYPTSL
Ga0224545_100018913	F023459	AGGAG	MLVAEKTVIALSWVSVRDRLPFDGHECVLICRNPNSNELKRAIGCRLHGNWEIEDRALVNCDVRAWLKLPSTPSDI
Ga0224545_100018914	F001851	AGGAG	MSAISILFGLLIVLLTLLLFHRTRRPNPQVAGFRSQRMCPSCGLITPRLKASCLECGKSL
Ga0224545_100018916	F000540	GAG	MAKKKAANLLPKLTDTEQDLLSHIQDGYQLETDSLGGNPVLRRLKDNQEIRPLSANRNTIKAMEQRGLISSGKGRDPLTIVWRLKKKIK
Ga0224545_10001896	F000281	N/A	MQTPIRERIAKLRDEIAQISEANREYVQYGKKMPGAAADHERRLQRLQEILDELVALTDWKKL