Scaffold Ga0224545

Basic Information
Taxon OID	3300022881 Open in IMG/M
Scaffold ID	Ga0224545_1000004 Open in IMG/M
Source Dataset Name	Peat soil microbial communities from Stordalen Mire, Sweden - 717 P1 20-24
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300022881 Open in IMG/M

Scaffold ID

Ga0224545_1000004 Open in IMG/M

Source Dataset Name

Peat soil microbial communities from Stordalen Mire, Sweden - 717 P1 20-24

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	228188
Total Scaffold Genes	202 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	158 (78.22%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (100.00%)
Associated Families	3

Scaffold Components

Scaffold Length (bps)

228188

Total Scaffold Genes

202 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

158 (78.22%)

Novel Protein Genes

3 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (100.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	(Source: IMG/M)

Taxonomy

All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia

(Source: IMG/M)

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil → Peatland Microbial Communities From Stordalen Mire, Sweden

Source Dataset Ecosystem

Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil → Peatland Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location
Location Name	Sweden: Norrbotten County, Stordalen Mire
Coordinates	Lat. (^o)	68.3533	Long. (^o)	19.0471	Alt. (m)	Depth (m)	0
Location on Map

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Source Dataset Sampling Location

Location Name

Sweden: Norrbotten County, Stordalen Mire

Coordinates

Lat. (^o)

68.3533

Long. (^o)

19.0471

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005215	Metagenome / Metatranscriptome	408	Y
F053425	Metagenome / Metatranscriptome	141	Y
F064994	Metagenome / Metatranscriptome	128	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0224545_1000004143	F053425	AGG	MSSPLPELNAGAEQCLLSRWQLLVFLRSSDPFRGVRLMRQGCLRICAVLITLLAVGLGGFSPRPARAESKYMFLTVTDYEAGISYRQAQWHAPIGHLINPCSYADHFVATIDWNDGSGEHKPDTNVQTRMLQTIPVVQSGIYLFWDDEHVANRIGTQVVTTKVALHCAGDPAGDREYIEQNEVTIYSRIPVNQVEFTKNGKSISTVKGHDNVDLTITLDAPAPPSGTWVKLEVMPAGNLNTLPPYVQVSGRETQETIRNLELKKPDADFGIVVTASTVGRSQESQKLTVTP
Ga0224545_1000004162	F064994	GGA	VYRASRIFLGRPIQHFDTSLIPILAFTTPGSHNRGVLRVRVSELMRSRLFKASLQIATVVLLLFAVAGLSTLAKNSQYFAKSNPTHYVNIATKMKVAPTPVALERAPLCPVARVLPPQPFATRNHGVEEICLPSPSIAVTVSIQHRSPPSSRS
Ga0224545_1000004165	F005215	AGGAGG	MLRKMSLGIVAGAALTLISPIFLPNHTRAAAQDNSKSEKIERTTVLAHLPVPGSAVRQIFLQQENGAQYLYLQQNVHFTVVNVTDPKNPQIVERVASGGKLTDVGAGLAIAIQSDKSGQGTAPTQSVRLMDLSDPKNPRTVKSFDGVTSIYSEDGRHLIYLTNSEGLWIVKHSETHRLPLCNSDSWEEAIAQCQ

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0224545_1000004

Overview

Ecosystem & Geography

Associated Families

Sequences