Scaffold Ga0224527_1001215

Overview

Basic Information

• Taxon OID: 3300022877
• Scaffold ID: Ga0224527_1001215
• Source Dataset Name: Peat soil microbial communities from Stordalen Mire, Sweden - C.B.S.T0
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 13480
• Total Scaffold Genes: 25
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 23 (92.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil → Peatland Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location

• Location Name: Sweden: Norrbotten County, Stordalen Mire
• Coordinates
  • Lat. (^o): 68.3529
  • Long. (^o): 19.0475
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F085039	Metagenome	111	N
F089728	Metagenome	108	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0224527_100121525	F089728	N/A	RYRRKAFLWVAMKSAVELLILFLVAALMPALLIVWLVVWVTRPIKTPWVRTIVGVLSGVVFGIFSSFALEALIFFGIFAIDLKTGAHDGGFLHCWKRAREEDADRHSTMLVPEAKAA
Ga0224527_10012157	F085039	GAG	MSMFEIVPPEPVVVSDKLAEKILQFIGSFMHADCSSMAEALFAAVPELKLVDNALTTMETVYNDCLLTQQGITDLDGKNLAETMDNLQEGFRALTGHDCRPCDFNMDPGAGREPEDGEDEDEDAQQSAGEDGNQVAHPAED