Scaffold Ga0224553_1013603

Overview

Basic Information

• Taxon OID: 3300022875
• Scaffold ID: Ga0224553_1013603
• Source Dataset Name: Peat soil microbial communities from Stordalen Mire, Sweden - 717 S2 10-14
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2210
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil → Peatland Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location

• Location Name: Sweden: Norrbotten County, Stordalen Mire
• Coordinates
  • Lat. (^o): 68.3532
  • Long. (^o): 19.0474
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F040984	Metagenome	160	N
F053027	Metagenome	141	N
F096456	Metagenome	104	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0224553_10136031	F096456	N/A	HLYSLVTNETGEGYIRAMSRFINEEIVAANRTTALFTMEIPKEQLRPGSRPTYLNLKGSAGLSFDAKANCGVYNQLQDWCDVPSNVDVWWESSEWMETVTNPDGVQARVAIRKPIIEVIIDKNKITGTKGTIFYRLEDKSGQMVECSDREQQQYRTRLVEAAATRDKADKSARGTLAGSRAAYRSKL
Ga0224553_10136032	F040984	AGGAG	MSTRNYKVEFDPTFFGGTYTGHGNHALIPEQLVEKVGMSAAFLKTTGHNPANIVHFAEDLRFDSKGLLCTDEPAIDTSTDSTVELPAEGTVQIPADELIQFPEPTVIEIGDQPVQIETESQDVPRLSRRKQAA
Ga0224553_10136034	F053027	AGGA	MLLTERQIDLRLKCPMFDMEDRHGPSSYECAQKLLRWAVLDAFKGRLVPVATLRGKFESIWNGHTAGWAPDHQQAYYAGLRAGNTAARKTYLFLQHYEVLKPVEAYSVECAGDCIEGEYAVVLRRHDRRTDERPMILQAHEWRPAYCQQPGAIELIRYVHLMASTDYTVPGVYHLPLFRGEPWKMKNFDLPLVRKAVTSI