Scaffold Ga0224553_1000320

Overview

Basic Information

• Taxon OID: 3300022875
• Scaffold ID: Ga0224553_1000320
• Source Dataset Name: Peat soil microbial communities from Stordalen Mire, Sweden - 717 S2 10-14
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 22563
• Total Scaffold Genes: 20
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 15 (75.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil → Peatland Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location

• Location Name: Sweden: Norrbotten County, Stordalen Mire
• Coordinates
  • Lat. (^o): 68.3532
  • Long. (^o): 19.0474
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003389	Metagenome	489	Y
F017951	Metagenome / Metatranscriptome	237	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0224553_100032015	F003389	GGA	MQITVWSVAADDDNGTYASVHETESAAYRRLIQLTVDADNKDDMAKAEAFMEAEDFDSLDEWIHEDVIEPLNTYSVDQHKIDVPTTPSSADDGNHITRRELASILHGLRLMQEQWEPQMHGCTSIGLHDPLELSEPNSCDHFCDEGDSPLGPSEIDELCERLNIGFCN
Ga0224553_100032020	F017951	N/A	MAIAHKFETAGLGIAPFRLVRVEMRWFSIPGIQGSKKPGSSCMFCGHPIAECCFLHDANGKEFHVGNECIKKAGDAGLYDTVKKELRRMKNQAEADAAAATFREGRDILARTDVRASLSTQPHPNSFFAAKGKTMADYYEFLLHNAPRGTVANTVGKLREIAAESIQ