Scaffold Ga0224553_1000293

Overview

Basic Information

• Taxon OID: 3300022875
• Scaffold ID: Ga0224553_1000293
• Source Dataset Name: Peat soil microbial communities from Stordalen Mire, Sweden - 717 S2 10-14
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 23370
• Total Scaffold Genes: 28
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 22 (78.57%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (100.00%)
• Associated Families: 6

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil → Peatland Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location

• Location Name: Sweden: Norrbotten County, Stordalen Mire
• Coordinates
  • Lat. (^o): 68.3532
  • Long. (^o): 19.0474
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003389	Metagenome	489	Y
F003764	Metagenome	469	Y
F003942	Metagenome	460	N
F004301	Metagenome / Metatranscriptome	444	Y
F006579	Metagenome / Metatranscriptome	369	Y
F017951	Metagenome / Metatranscriptome	237	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0224553_100029313	F003389	GGA	MQITVWSVAADDDNGTYASVHETELAAYRRLIELTVDADNKDEIAKAEAFMEAEDFDSLDEWIHEEVIEPLNTYSVDQHKLDVPTAPASADDGKHITRRELASVIHGLRLMQEQWEPKMHGCTSIGLHDPLELSEPNSCDHFCDEEDSPLSPTEIDDLCERLNMGLNN
Ga0224553_100029314	F003942	GGAG	MLGHRLNSTIHCYEDVELIEVHSEYLKCSFMVAKDEWEIGKKLLNIFSPIDGNVLGFPHYRLHRDNISATGPKLPDGTTVQPGMAEAIEIQRQAGHTIYADHLSAMLYGTGLNPARS
Ga0224553_100029316	F003764	GAG	MQIQIDSPYIQDENPAALLAGAEIEAAGLHRCLKIVRLWSQSSAVPRLRREEIIEEEQRLASLYAAILQETGSAFGIDKADELKVRIEAACILDDWECPPAEQGLLFPILNEPMTEASPATARK
Ga0224553_100029317	F004301	GGAG	MTAMQFSLFDARPTAATVGMEPSVNARNAKRQLDTLRKQLATAQADLEDVDYNLSIVVMHQRASREGKIDANWWDAAMRFGMLDPGEEPVYRIGSYPVKVMRWIRHLIFTLNAERRDVLSAIADLEPKVAALSQIIGNAIQ
Ga0224553_100029318	F017951	GGAG	MAIAHKFETAGLGIAPFRLVRVEMRWFSIPGIPGSKKPGSSCMFCGHPIAECCFLRDANGKEFHVGNECIKKAGDVGLYDTVKKELRRMKNQAEADAAAATFREGRDILARADVRASLSTQPHPNSFFAAKGKTMADYYEFLLHNSPRGTVANTVGNLREFAAESIQ
Ga0224553_10002932	F006579	AGGAGG	MTPNNASSTIPGNPDSILELMELPAFQNLLAKVETNFYRNRPKEAAELELEGTIRFTLQERAAQAWEILAKARSTGLPMEQAQELISELVYPPLESDGN