Scaffold Ga0224550_1009187

Overview

Basic Information

• Taxon OID: 3300022873
• Scaffold ID: Ga0224550_1009187
• Source Dataset Name: Peat soil microbial communities from Stordalen Mire, Sweden - 717 P3 10-14
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1390
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil → Peatland Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location

• Location Name: Sweden: Norrbotten County, Stordalen Mire
• Coordinates
  • Lat. (^o): 68.3535
  • Long. (^o): 19.0472
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002101	Metagenome / Metatranscriptome	593	Y
F004095	Metagenome / Metatranscriptome	453	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0224550_10091871	F004095	AGGAG	MSGINGDKARFNRRRRQKISRRQSNEKMLKALAEKHLVAPPKPANLKEKVA
Ga0224550_10091872	F002101	AGGAG	MTAPIVALPLSTADGIPAKKKRVLLLDTSQTKRDLRADVMRKLGIEVDCAADVIEARCWWRADLYNLVLINVAGETDSRDKFCTDLRSATPPQRIAFFVGGPEYLASAPHSDEAPAEPDADALHKEMVAALLAQDSVSSSQRWGILEACRKISSVRAVSEVRTRAIRETPRPSRWAEAIEQYSAPEPTTSQPLFATDTFATETAAVESPAVETEREELL