Scaffold Ga0224550_1000344

Overview

Basic Information

• Taxon OID: 3300022873
• Scaffold ID: Ga0224550_1000344
• Source Dataset Name: Peat soil microbial communities from Stordalen Mire, Sweden - 717 P3 10-14
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9688
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (66.67%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil → Peatland Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location

• Location Name: Sweden: Norrbotten County, Stordalen Mire
• Coordinates
  • Lat. (^o): 68.3535
  • Long. (^o): 19.0472
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000249	Metagenome / Metatranscriptome	1459	Y
F001709	Metagenome / Metatranscriptome	648	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0224550_100034410	F000249	GGAGG	MKKLLWILVLPALLSAPLSERGRAQSSSSGTAAQSLETQPRMFFPRDMLWGWAQLDLSPPHNEIDPNICAGNAGQYGGVNAPCSMFARYMLSGTLEVRPFGRGPLRRFMLFGAPSFLFGKNVPQTLYTWSPDAIGIEHSWGAGIYIGKGFEFRVTQHFLFDRLGARDTNLGAADEGNNGPWGRYMAVGVRKYFGTRRW
Ga0224550_100034411	F001709	AGGA	MPQEVSVSYQAIKSKVYRLIDALVMGEKSEAEVQESIRRWWDLIHPADRPIAMKYLLAVLACSNSALEAIEGSMMEATSLQEFAHPDSARTLKLLGRMVKQATFSTPA