Scaffold Ga0224550_1000055

Overview

Basic Information

• Taxon OID: 3300022873
• Scaffold ID: Ga0224550_1000055
• Source Dataset Name: Peat soil microbial communities from Stordalen Mire, Sweden - 717 P3 10-14
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 23995
• Total Scaffold Genes: 22
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 15 (68.18%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil → Peatland Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location

• Location Name: Sweden: Norrbotten County, Stordalen Mire
• Coordinates
  • Lat. (^o): 68.3535
  • Long. (^o): 19.0472
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F022474	Metagenome / Metatranscriptome	214	Y
F029822	Metagenome / Metatranscriptome	187	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0224550_100005512	F022474	AGGAGG	VKTTLFAATLVVALTLSAAAAQKPAVSQHLAGSTEPIKLAGPGIPPALCNPCLFYGGDLNPADANAAGLSDENTLLIVGGSSTYGSFTATGVSATVTGILFNVQASTNFDPATASYDVRTGVSDGNGGNSVASGTASIAVAATGRNFIGLNEYTVAVHIPALTLTAGVEYWFNVTPQCTNGATDGSCYEGRIFASNTTQETNNVRGSAQSPHSMYLNSSFFGFTFANWCDSSLGLNSNQCLGLSYGLIGSEN
Ga0224550_100005513	F029822	AGGAGG	VKTTLPAVAFVVALSLTAVAADSKVPASQHSAGNPSVIVKGFKDSPSPLPPALCNPCLFYSGDLNPTDPNAAGMSDENTLLIIGGSSTYGAVNIPVAATVYGIVYNVQASAAFDPLQASYDVRTGVSEGNGGASIASGTGSIQVSATGRNFLGLYEYTIAVSLSAPLALGPGEYWFNATPECLNTLDGSCNVFRQFASNTTQEANNLHGSWQPVHEMFLNSSFFGFTWANWCDSSLGFNNAQCAGLSFGLRGQE