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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300022872 Open in IMG/M |
| Scaffold ID | Ga0224526_1003338 Open in IMG/M |
| Source Dataset Name | Peat soil microbial communities from Stordalen Mire, Sweden - C.B.S.T-25 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 4816 |
| Total Scaffold Genes | 4 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 2 (50.00%) |
| Novel Protein Genes | 3 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (66.67%) |
| Associated Families | 3 |
| Taxonomy | |
|---|---|
| Not Available | (Source: ) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil → Peatland Microbial Communities From Stordalen Mire, Sweden |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Sweden: Norrbotten County, Stordalen Mire | |||||||
| Coordinates | Lat. (o) | 68.3529 | Long. (o) | 19.0475 | Alt. (m) | Depth (m) | 0 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F032513 | Metagenome | 179 | N |
| F057830 | Metagenome | 135 | N |
| F094792 | Metagenome | 105 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0224526_10033381 | F094792 | N/A | DYNQSVTITGDVLYMVQNQFFQITNQFAADGVTPLYFYHNFGQSVSGATILNLDGSVVTPAPTVLFNGNWMYHDVPSTLAFQVRYVDSAGRVKISLLHYNQVMPLSTNGDTSKGYAFTGGMIELASAAVSYSIRFLVQNGYQALPPYEAPSYLPWFPRVRFSLQPPALEYPIQSFLPTRPYLLGYWIPGTVLGPNLIQFDRQGIYNDPNHLPDIVVFDSNQEIKYAMDGSANGEPETHGTLYPWKRNQISDVDPFTGRVAVVPTVLTTDTVYGFYSYFEPDVVYTALDVNPVTNPSIKNTVICFYYRATSNPLQEIYHQVFNDSGPIAGMTNDPNPPAWSGQTPASGTVFAEMVVGVSFGIATFEMTDVRTRGGGLAPAYQTIPQADNFWDLGYLDGRPYPVGGALVVYLPTRILNTMTRDVVAGIVNSVLPMGSIAAIRYYDPEGNESV |
| Ga0224526_10033382 | F032513 | AGGA | MAKPFYLIWQEGTTVLEGYDGANWIDGQLTFPIVFPGITTTPLALSLSSSASVNLTFETLINVAFYLTGSDAPTVQGEWPYITDAYGNATASVTGGVEISFDNGLTWNRFSNTVGLQSTPSTWLPLPQEAVGSVGTAGQIGAFDTAHMLVRYVIPPSVSLTKVLDVQLQVDCDVV |
| Ga0224526_10033384 | F057830 | AGAAG | MFNSLLLDSNDSVIADRLSRLQDSLRGLTLSTREEYQAAVYSMVNTVLNLGDNMQTLTQIRSKPAIVGDLSQNLTLLNQDSNDIAAEILRIENSAGDLYNLAAASQNALRQLIRQSIYISNQQQFLAPFIDDSVLQPGYTATLDYNAGLATLPLGTQTLLSPTFSIGIGSSGSAVNAISNLSSTTVGTSFQWSGSSLELLLSFPSPTIVNRLQIALDTYAGLEITNLTSSPDGLVFNDVLADLD |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |