Scaffold Ga0224526_1002340

Overview

Basic Information

• Taxon OID: 3300022872
• Scaffold ID: Ga0224526_1002340
• Source Dataset Name: Peat soil microbial communities from Stordalen Mire, Sweden - C.B.S.T-25
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6179
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (77.78%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (100.00%)
• Associated Families: 6

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil → Peatland Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location

• Location Name: Sweden: Norrbotten County, Stordalen Mire
• Coordinates
  • Lat. (^o): 68.3529
  • Long. (^o): 19.0475
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003389	Metagenome	489	Y
F003764	Metagenome	469	Y
F003942	Metagenome	460	N
F004301	Metagenome / Metatranscriptome	444	Y
F017951	Metagenome / Metatranscriptome	237	N
F042119	Metagenome	158	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0224526_10023403	F003389	GGA	MQITVWSVAADDDNGTYASVHETERAAYRRLIQLTVDADSKDDVAKAEAFMEAEDFDGLDEWIHEEVIEPLNTYSVDQHKIDVPTISSSADDGKHITRRELASVLHGLRLMQEQWEPKMHGCTSIGLHHPLELSEPNSCDHFCDGEDSPLGPGEIDELCERLNMGFCN
Ga0224526_10023404	F003942	GGAG	MLGHRLNPTIHRYEEVELIEVHSEYLECSFMVAKDEWETGKKLLNIFSPIDGNVLGFPHYRLHRDNISATGPKLPDGTTAQPGMAEAIEMQRQAGHAIYADHLSAMLYGNGLNPARS
Ga0224526_10023405	F042119	GAG	METIIREVNPARLAWGTFNHAKSDYMNEGDIPASYSGDCIAMGQPVRKPFRMDGEMWVAIGLSNDSARAYRLCPMRIFNGIPTNYREKSGSAERAEEARNDPNGFYDRMTVKHGGQQFVLCGPEVQIVRSQHEDVSVPQVQLALF
Ga0224526_10023406	F003764	GAG	MQIQLDSPYIQDENPAALLAGAEIEAAGLHRCLKIVRLWSQSSALPQSRHDEMVEEEQRLANLYAATLFEIGSVFGLRAADELKVRIEAACVLEDWECPPAEQGLLFPIPNGPATKASPATARK
Ga0224526_10023407	F004301	GGAG	MTAMQFSLFDARSVAPTVGMEPSVNARNAKPQLDTLRKQLATAQADLEDVDYNLSIVAMHQRASREGKIDANWWDAAMRFGILDPGEEPVYRLGSYPVKVMRWIRHLIFTLNAERREVLTAIADLEPKVAALSQITGNAIQ
Ga0224526_10023408	F017951	GGAG	MAIAHKFETAGLGIAPFRLVRVEMRWFSIPGIPGSKKPGSSCMFCGHPIAECCFLRDANGKEFHVGNECIKKAGDAGLYDTVKKELRRMKNQAEADAAAATFREGRDILVRANVQASLSTQPHPNSFFAAKGKTMADYYEFLLHNSPRGTVANTVGKLREFAAESIQ