Scaffold Ga0224526_1000681

Overview

Basic Information

• Taxon OID: 3300022872
• Scaffold ID: Ga0224526_1000681
• Source Dataset Name: Peat soil microbial communities from Stordalen Mire, Sweden - C.B.S.T-25
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 14495
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (78.57%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil → Peatland Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location

• Location Name: Sweden: Norrbotten County, Stordalen Mire
• Coordinates
  • Lat. (^o): 68.3529
  • Long. (^o): 19.0475
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004581	Metagenome	432	Y
F007956	Metagenome / Metatranscriptome	341	N
F012741	Metagenome	277	Y
F069592	Metagenome	123	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0224526_10006811	F007956	N/A	HREMAKTMLASKINCLNSEYPRNSFSLKNPDVAKEFLATAFYHNAAAAKGLTAFDKDVFAASKKAALREFSVLAASVETGGSATKEFNNTFALSIERPPIGAPSQNLRIAAEPLLEKRQELAAIFGKCAWYHSNQSGRTPEEREQRRAARTKTTQELER
Ga0224526_10006812	F004581	GGAGG	MQHAEIYNGHARRFQQMARHIELSMTPQHQQKHGGPDPISTNDITLATTLFNSVYGYPAGKQAVLAMSAGLLPGEERSQTVRGLFRMTAACSEYDQTLSYTLLPLPGREIETANLLNATAAYSIERAGAHSRLVPPSTRHPVQLER
Ga0224526_10006817	F012741	AGGAGG	MLTPQSRNPFGVLSMTNSSGGIFQSLKRQTAAAGFIAYAGIISAVLGLWMWLWRDTTLQNKTLTRTVGTVLVLSSFFFFQHLRRGFGAFFLILISTGIGIAVHYSNHPLIHGDRPEIPAIVLIAIGLIAYFAQTRYLSGFIFLLASSATIIGILWSYPAFFCPIVMVITGGVLILLGMMIRSLAMFNSFM
Ga0224526_10006818	F069592	AGG	MNDNQSSHTVPLRLFAQNLVQRLEQLNNVDQFTDSSNLALPFALFQLCQINLSVTTSVEAEALLGGRSLPRCGRAASSATHPSGKETPQRPHSD