Scaffold Ga0222697_1000086

Overview

Basic Information

• Taxon OID: 3300022868
• Scaffold ID: Ga0222697_1000086
• Source Dataset Name: Saline water microbial communities from Ace Lake, Antarctica - #1402
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 46107
• Total Scaffold Genes: 75
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 41 (54.67%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Archaea → DPANN group → Nanoarchaeota → unclassified Nanoarchaeota → Nanoarchaeota archaeon (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Ace Lake
• Coordinates
  • Lat. (^o): -68.4725
  • Long. (^o): 78.188
  • Depth (m): 14

Associated Families

Family	Category	Number of Sequences	3D Structure?
F073008	Metagenome	120	Y
F094884	Metagenome / Metatranscriptome	105	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0222697_100008629	F094884	N/A	MENNKLIGSTYVNILQDEKGEIKFAYGYEVDDNEVSLNDLAMLNSFLDKIKAKAEEDFSERLEVNDKEFSVEGTKE
Ga0222697_100008641	F073008	N/A	MEEKNKTIATAYINLIQDSKGETQFEYGYDLDKVKVSLNDIGMFLSFLDTLQSKAEQDFKDRLDVQEKKFEVTKE