NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0224532_1000012

Scaffold Ga0224532_1000012


Overview

Basic Information
Taxon OID3300022863 Open in IMG/M
Scaffold IDGa0224532_1000012 Open in IMG/M
Source Dataset NamePeat soil microbial communities from Stordalen Mire, Sweden - 717 E1 1-5
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)51243
Total Scaffold Genes74 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)64 (86.49%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil → Peatland Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location
Location NameSweden: Norrbotten County, Stordalen Mire
CoordinatesLat. (o)68.3532Long. (o)19.0469Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F052557Metagenome / Metatranscriptome142Y
F058535Metagenome / Metatranscriptome135Y

Sequences

Protein IDFamilyRBSSequence
Ga0224532_100001270F052557GGAMIAASFFDRWVWPAGGSGGIPGDVVATLIWVILAAIATSIFYPPLRRAVEKYVKRHFEEGTAELHAKLDHIIEHHPDIPPYHSKKQEKSNGH
Ga0224532_100001272F058535AGGMTYEYTELYIPVGKKGWKELGAALVELPAQGWELFMAVPITGLTALVPGISGSRTVAIVHYFRREKA

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