Scaffold Ga0224528

Basic Information
Taxon OID	3300022861 Open in IMG/M
Scaffold ID	Ga0224528_1012170 Open in IMG/M
Source Dataset Name	Peat soil microbial communities from Stordalen Mire, Sweden - C.B.S.T25
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300022861 Open in IMG/M

Scaffold ID

Ga0224528_1012170 Open in IMG/M

Source Dataset Name

Peat soil microbial communities from Stordalen Mire, Sweden - C.B.S.T25

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	2512
Total Scaffold Genes	6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	5 (83.33%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	5 (83.33%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

2512

Total Scaffold Genes

6 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

5 (83.33%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

5 (83.33%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil → Peatland Microbial Communities From Stordalen Mire, Sweden

Source Dataset Ecosystem

Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil → Peatland Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location
Location Name	Sweden: Norrbotten County, Stordalen Mire
Coordinates	Lat. (^o)	68.3529	Long. (^o)	19.0475	Alt. (m)	Depth (m)	0
Location on Map

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Source Dataset Sampling Location

Location Name

Sweden: Norrbotten County, Stordalen Mire

Coordinates

Lat. (^o)

68.3529

Long. (^o)

19.0475

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003389	Metagenome	489	Y
F003764	Metagenome	469	Y
F003942	Metagenome	460	N
F004301	Metagenome / Metatranscriptome	444	Y
F026465	Metagenome	197	N
F042119	Metagenome	158	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0224528_10121701	F003389	GGA	MQITVWSVAADDDNGTYASVHETESAAYRRLIQLTVDADNKDDMAKAEAFMEAEDFDSLDEWIHEDVIEPLNTYSVDQHKIDVPTTPSSADDGNHITRRELASILHGLRLMQEQWEPQMHGCTSIGLHDPLELSEPNSCDHFCDEGDSPLGPSEIDELCERLN
Ga0224528_10121702	F003942	GGAG	MLGHRLNPTIHRYEDVEIIEVHSEYLECSFMVAKDEWETGKKLLNIFSPIDGNVLGFPHYRLHRDNISATGPKLPDGTTAQPGMAEAIEIQRQAGHTIYAENLSAMLYGDGLDPARS
Ga0224528_10121703	F042119	GAG	MNTIIREVNPARLAWGTFDHAKSDYMNEGDIPASYSGDCIAMGQPVRKPFRMDGEMWVAIGLSNDGARAYRLCPMRIFNGTPTNYRDKSGSAERAEEARNDPNGFYDRMTVKHGGQQFVLCGPEVQIVASQHEDVFVPQVQLALF
Ga0224528_10121704	F003764	GAG	MQIQLDSPYIHDENPAALLAGAEIEAAGLHHCLKIVRLWSQSNALPQSRHDEMIEEEQRLAKLYAAILFEIGSAFGIEQADELKVRIEAACILNNWECPPAEQGLLFPIPNDPTTEASHATARK
Ga0224528_10121705	F004301	GGAG	MTAMQFSLFDARPSAATLGMEPSVNARNAKRKLDTLRKQLATAQADLEDVNYNLSIVAMHQRASREGKIDANWWDAAMRFGMLDPGEEPVYRFGSYPVKVLRWIRHLIFTLNAERRDVLSAIADLEPKVAALSQIIGNAIQ
Ga0224528_10121706	F026465	N/A	ECCFLRDANGKEFHVGNECIKKAGDAGLYDTVKKELRRMKSQAEADAAAATFREGRDILARTDVRASLSTQPHPNSFFAAKGKTMADYYEFLLHNAPRGTVANTVGKLREIAAESIQ

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0224528_1012170

Overview

Ecosystem & Geography

Associated Families

Sequences