Scaffold Ga0224528_1006994

Overview

Basic Information

• Taxon OID: 3300022861
• Scaffold ID: Ga0224528_1006994
• Source Dataset Name: Peat soil microbial communities from Stordalen Mire, Sweden - C.B.S.T25
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4155
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (88.89%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil → Peatland Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location

• Location Name: Sweden: Norrbotten County, Stordalen Mire
• Coordinates
  • Lat. (^o): 68.3529
  • Long. (^o): 19.0475
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F023510	Metagenome	209	N
F057061	Metagenome / Metatranscriptome	136	N
F071899	Metagenome	121	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0224528_10069941	F057061	AGGAG	MSNDKNLLSELIALSHSPIHNHLKEEDVKALRLEDEQTAEEFIYSDGEATEVEVPLWNHDSRMAFHILYDATDVEIITRVRRPYPGKPVLYQKDEHFMQHETRQVLDALMPEGARYGIVTFEASGKDGCKNMAETAKFLCRHGWTEGDERFRVVYADVNGTGTMVLVSASANVKRLKDLGVFISSDPKAPKRMRRTMAAHQSMLEAQIVSSYPAPTGQVTMAKLKNGRVISILNFNMKLLNDQETAFLDGSGVINLPGFDGCAATLVGPFGLGKGIYAANERMADYDIYLYGSKDEVVFHGDRIYIGLLLKTSKHELMTDLQTITNAGFFEEDLCVRYGLEVMDERAKILFGDDEDAITDYFATLVNVSDAARRDMD
Ga0224528_10069943	F023510	AGG	VGLWYIEGRNHAGNMVKPIDPWPAPGPNSHIFFKVTAVNPNHYGIPPTTFIVEALNEEAAVECIKRAIWAGILLPHSYNGALNPWPTYFQSNALRYLLDGMFVAVELETLPTLRFFPDPFVRDEWLRYQLSWMARLVEDIQKWWDAMLARPFFTSWFGR
Ga0224528_10069948	F071899	GAGG	MQARVKLTPRIIARLIVGKPVTVNLPAGTSSLSLVTEGKFHEFLRAFHAQEEFDPETSHTEVIGLFDLIFGKH