Scaffold Ga0224528_1005801

Overview

Basic Information

• Taxon OID: 3300022861
• Scaffold ID: Ga0224528_1005801
• Source Dataset Name: Peat soil microbial communities from Stordalen Mire, Sweden - C.B.S.T25
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4954
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (90.91%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil → Peatland Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location

• Location Name: Sweden: Norrbotten County, Stordalen Mire
• Coordinates
  • Lat. (^o): 68.3529
  • Long. (^o): 19.0475
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F031336	Metagenome	182	N
F044872	Metagenome	153	N
F050080	Metagenome	145	N
F062380	Metagenome	130	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0224528_10058012	F050080	AGGAGG	MASSFVSRQRNQQRNTPPVAIKPFVRAAQNFALQTKQNREILDGQGQSMGTEVYTEIRMQGTVLAVRDEGIEDEFGRQYIGLVIQINPDKDRFVQTADPTLHAQILALKQGDLVYVTSEWHRNSSGRGFHARAKTITVLAQASTPGPVAVESIAEALASAA
Ga0224528_10058014	F062380	GAGG	MPSDFNDSECNDFEKLLFADPGSTGTCKLIVAYHPGFPLALGRIECASGLPIDVRVNVLESTPVLHTAELVFTGKTTDLCELQMRLTQWAAQFPHLPPMPEEALYARDNPSAPSGPPEGVDQSGV
Ga0224528_10058015	F044872	GGAGG	MNTGLLNSFASMVKGSILVTDAIKAAFSKFEGGIPSDDQVLVAISEVVFTVTLNKDARQVLSFYLIQLYANQLFISDPSSEFGDCMRIARREIDSLLSFSVLDRIAKYVWEHREQFLTLWTVYAENSAAHPESTSDILGATLTESIQLLEAA
Ga0224528_10058018	F031336	AGGAG	VLNGDVIILNPPKDPSWFSDVSQSVSLFFWEHSDLIPLLLAEVALAVLIFAGFFWWERRKSKQAVQVGELERMYSAEPIPWPR