Scaffold Ga0224528_1002472

Overview

Basic Information

• Taxon OID: 3300022861
• Scaffold ID: Ga0224528_1002472
• Source Dataset Name: Peat soil microbial communities from Stordalen Mire, Sweden - C.B.S.T25
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 10404
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (62.50%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Nostocales → Aphanizomenonaceae (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil → Peatland Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location

• Location Name: Sweden: Norrbotten County, Stordalen Mire
• Coordinates
  • Lat. (^o): 68.3529
  • Long. (^o): 19.0475
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000109	Metagenome / Metatranscriptome	2202	Y
F010440	Metagenome	303	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0224528_10024722	F000109	AGGTGG	MTPPKKAAIRTKRRIVAPLEKRTQLRLTIDSRFTKAHFNQLFAALGIRKKNALAEHIIMNFKTKVAQAQLVAFYNGPWLNIPFQAIDTAFVFPLTYEIADELERVGGEVLGGVNRSKAFRVMVAYFASIYKLKSPTYTTGA
Ga0224528_10024724	F010440	AGG	MTVAEAEERIEALTRNLASSEISPAKRVMWEAQMARCYRIIQRARQQAHRSLASFAGTLLDMIGDTAFDQDHNTAIITAAHLIRGASIEQLAVAVPAAIRETPTCDTRPNRVKCPEFTEIVVCLLRLDSIPFSCERNIAIRTALHLSNIVGRPQIHQSVRRAQADTGGLGPKGMVNRLTEICSAYRPQKSGSSPCGSGSKKITSLSTPSTA