Scaffold Ga0224528_1001338

Overview

Basic Information

• Taxon OID: 3300022861
• Scaffold ID: Ga0224528_1001338
• Source Dataset Name: Peat soil microbial communities from Stordalen Mire, Sweden - C.B.S.T25
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 16409
• Total Scaffold Genes: 18
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 14 (77.78%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (85.71%)
• Associated Families: 7

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil → Peatland Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location

• Location Name: Sweden: Norrbotten County, Stordalen Mire
• Coordinates
  • Lat. (^o): 68.3529
  • Long. (^o): 19.0475
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003389	Metagenome	489	Y
F003764	Metagenome	469	Y
F003942	Metagenome	460	N
F004301	Metagenome / Metatranscriptome	444	Y
F006579	Metagenome / Metatranscriptome	369	Y
F017951	Metagenome / Metatranscriptome	237	N
F042119	Metagenome	158	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0224528_10013381	F017951	N/A	FETAGLGIAPFRLVRVEMRWFSIPGIPGSKKPGSSCMFCGHPIAECCFLRDANGKEFHVGNECIKKAGDAGLYDTVKKELRRMKSQAEADAAAATFREGRDILARADVRASLSTQPHPNSFFAAKGKTMADYYEFLLHNSPRGTVANTVGKLREFAAESIQ
Ga0224528_100133817	F006579	AGGAG	MTPNDASSTIPGNPDSILELMKLPAFQNLLAKLETNFYRNRPKEAADLELEGTIRFTLQERAAQAWEILKEARSTGLPMDQAQELISELVYPPLESDDN
Ga0224528_10013382	F004301	GGAG	MTAMQFSLFDARPAAATVDMEPSVNARNAKRQLDTLRKQLATAQADLEDVDYNLSIVAMHQRASREGKIDANWWDAAMRFGMLDSGEEPVYRLGTYPVKVMRWIRHLLFTLNAERRDVLSAIADLEPKVAALSQIIGNAIQ
Ga0224528_10013383	F003764	GAG	MQIQLDSPYSQDENPAALLAGAEIEAAGLHRCLKIIRLWGQFSALSRPRRDQMIEEEQRLANLYAATLFEIGSAFGLRAADELKVRIDAACILDDWECPPAEQGLLFPVPNDSATEANPATARK
Ga0224528_10013384	F042119	GAG	METIIREVNPARLAWGIFDHAKSDYVSEGDIQASYSGDCIAMGQPVRKPFRMDGEMWVAIGLSNESARAYRLCPLRIFNGTPTNYRDKSGSAERAEEARNDPNGFYDRMTVKHGGQQFVLCGPEVKIVASQHEDVSEPQVQLALF
Ga0224528_10013385	F003942	GGAG	MLGRRLNPTIHRYEDVELIEVHSEYLECSFMVAKDEWETGKKLLNIFSPIDGNVLGFPHYRLHRDNISATGPKLPDGTTAQPGMAEAIEIQRQAGHTIYAENLSAMLYGTGPNPARS
Ga0224528_10013386	F003389	GGA	MQITVWSVAADDDNGTYASVHETECAAYRRLIQLTVDADNKDDVAKAEAFMEAEDFDSLDEWIHEEVIEPLNTYSVDQHKIDVPTIPSSADDGKHITRRELASVLHGLRLMQEQWEPKMHGCTSIGLHEPLELSEPNSCDHFCDEEDSPLSIDEIDQLCERLNTEICN