Scaffold Ga0224528

Basic Information
Taxon OID	3300022861 Open in IMG/M
Scaffold ID	Ga0224528_1000485 Open in IMG/M
Source Dataset Name	Peat soil microbial communities from Stordalen Mire, Sweden - C.B.S.T25
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300022861 Open in IMG/M

Scaffold ID

Ga0224528_1000485 Open in IMG/M

Source Dataset Name

Peat soil microbial communities from Stordalen Mire, Sweden - C.B.S.T25

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	30401
Total Scaffold Genes	30 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	26 (86.67%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	5 (100.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

30401

Total Scaffold Genes

30 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

26 (86.67%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

5 (100.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: IMG/M)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: IMG/M)

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil → Peatland Microbial Communities From Stordalen Mire, Sweden

Source Dataset Ecosystem

Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil → Peatland Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location
Location Name	Sweden: Norrbotten County, Stordalen Mire
Coordinates	Lat. (^o)	68.3529	Long. (^o)	19.0475	Alt. (m)	Depth (m)	0
Location on Map

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Source Dataset Sampling Location

Location Name

Sweden: Norrbotten County, Stordalen Mire

Coordinates

Lat. (^o)

68.3529

Long. (^o)

19.0475

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003389	Metagenome	489	Y
F003764	Metagenome	469	Y
F003942	Metagenome	460	N
F006579	Metagenome / Metatranscriptome	369	Y
F042119	Metagenome	158	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0224528_100048517	F003764	GAG	MQILEDRPYAHDENPAALLAGAEIEAAHLYRSIKIVRLWNQSSALSRPRREEMVEAEQQLASLYAAILFEIGSAFGLRAADELKLQIEAACILEDWECKPAEQGLLFPIPSDPASAISQARARR
Ga0224528_100048518	F042119	AGAAGG	METIRKVNPARLAWGIFDHQQSDYVNEGDIPASYSGDSIAMGQPVRKPFRMDGEMWLTIALSSKEARAYRLCPLRIFTGSPTTYRDKTGTDEGAEAARKDPNGFYDRMTVKHGGQEFVLCGPEVQIVAGQPEDVPVPQVQLALF
Ga0224528_100048519	F003942	GGA	MLGRRLNPTIHRYEDVELIEVHSEYLECSFMVARDEWESGKTLLTIFSPLDGNVLGFPHYRLHRNNIFAVGPRLPDGTTAQPGMAEAIEIERQAGHTIYADHLSAMLYGTGTNPARS
Ga0224528_100048520	F003389	GGA	MQITVWSVAADDDNGTYASVHETEHTAYWRLIQLTVDADNKDDVAKAEAFMEVEDYEGLDAWIHKEVIEPLNTYSVNQHTLDVPASSGPAPADENKHITRRELASVLHGLRLMQEQWEPTMHGCSSISLHEPQELSEPNSCDHFCDEEDSPLNPTEIDELCERLNTEIRN
Ga0224528_100048522	F006579	AGGAGG	MTPNDVSSTIPGNPNSILELMKLPAFQDLLAKVETNFYRNRPKEAADLELEGTIRFTLQERAAQAWEILAKARSTGLPMEQAQELISELVYPPLESDGN

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0224528_1000485

Overview

Ecosystem & Geography

Associated Families

Sequences