NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0222679_1026290

Scaffold Ga0222679_1026290


Overview

Basic Information
Taxon OID3300022858 Open in IMG/M
Scaffold IDGa0222679_1026290 Open in IMG/M
Source Dataset NameSaline water microbial communities from Ace Lake, Antarctica - #939
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1092
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Ace Lake
CoordinatesLat. (o)-68.4725Long. (o)78.188Alt. (m)Depth (m)16
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F059653Metagenome / Metatranscriptome133Y
F091296Metagenome / Metatranscriptome107Y

Sequences

Protein IDFamilyRBSSequence
Ga0222679_10262902F091296GGAGMVIKRYPHTATISYYGAGTTNSLGIYTEGTLVTVGIVCNIQPNTTRYIIGESGDMIGYNWDIMSPLFTGAGSVPDDATINFHDKDHVIKLLYPYQKHVEVKC
Ga0222679_10262903F059653AGGAGMTNLEALQSQTEYSNDNLLEKILLDKGITSGDTYTAANEKNIDLAAASLYFTLAAHPEFRDGKTSIKYNPVQLIAMARAIERKYGVNVATVDGAAIW

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