Scaffold Ga0222679_1001040

Overview

Basic Information

• Taxon OID: 3300022858
• Scaffold ID: Ga0222679_1001040
• Source Dataset Name: Saline water microbial communities from Ace Lake, Antarctica - #939
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8647
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (70.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Ace Lake
• Coordinates
  • Lat. (^o): -68.4725
  • Long. (^o): 78.188
  • Depth (m): 16

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015275	Metagenome / Metatranscriptome	256	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0222679_10010404	F015275	GGAG	MGVVVSLIILAVGVFAFFVTISNIPDSAAPTDGNMSNATATYYGITNITKTGNAVFNIIGIVLIIGAIMSIVGLVYNYVR
Ga0222679_10010405	F015275	AGGAGG	MKTRFGFIDPGAIMGVVVSLIILAVGVFAFFVTIDQIGTTASTGANKYMIENAVNNVSATGNAVFNIIGIVLIIGAIMSIVGLVYNYVR