Scaffold Ga0222691_1005175

Overview

Basic Information

• Taxon OID: 3300022851
• Scaffold ID: Ga0222691_1005175
• Source Dataset Name: Saline water microbial communities from Ace Lake, Antarctica - #1237
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2823
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → environmental samples → uncultured marine virus (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Ace Lake
• Coordinates
  • Lat. (^o): -68.4725
  • Long. (^o): 78.188
  • Depth (m): 12

Associated Families

Family	Category	Number of Sequences	3D Structure?
F020601	Metagenome	223	N
F052704	Metagenome	142	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0222691_10051751	F020601	AGGA	MATIKSLSKCFQEVKRLTGNLLSDEKINLLLDEAKIKINENKFQGAEVKSEKILAQEIIDKFEYDQVLKKRNIAENNMKALENYEKIIDAVTMSNGKINPIEAVNGYLVGMQKFSKITRDSIGLKQTTLENVEITKLVNAIRNLGKDAWNDFSEGRIDLEIMREMIGEPTGVKGAKDISIILKQSQNSWRLRLNDLGANIGELDDWITRTTHNTEK
Ga0222691_10051753	F052704	N/A	GDENMGMIVNHLQDEKTPETILMAIATDSSELAKDLFNSSTLPQLIIGANNKESGKVASLQKLIAKETEDFGQVLDSQGEGSESKAAKMNRINEALLKVVLVRTNKNVSAEDAVESAANDFLNDYVLNDALTALIPKTINKKPIPIAAVQNKNEAILLGVKDTSPGNYLDRFMGDKGYMHYAASLNLPNLTEEEAKKRIGFTIRNYSKWLNNSDMTGMVLYSDFGGAGMQPVVNADGQRIEYYLLKLPNQDPTINDTASVYPVTGDVLPLLPDPPSGDYFQYDEFLIDETINNAKK