Scaffold Ga0224531_1016222

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0224531_1016222

Scaffold Ga0224531_1016222

Overview

Basic Information
Taxon OID	3300022849 Open in IMG/M
Scaffold ID	Ga0224531_1016222 Open in IMG/M
Source Dataset Name	Peat soil microbial communities from Stordalen Mire, Sweden - C.B.S.T100
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1706
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (33.33%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil → Peatland Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location
Location Name	Sweden: Norrbotten County, Stordalen Mire
Coordinates	Lat. (^o)	68.3529	Long. (^o)	19.0475	Alt. (m)		Depth (m)	0
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F027393	Metagenome	194	N
F050079	Metagenome	145	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0224531_10162221	F027393	N/A	PYGSASTASNWRYLVMTPDGNFQVLLPDGTLVAYSGSAGWQSRALSTPAPVSLALTMIGTYVLMLECMGNGQTATADEVPYPNLATPVINTYDLSSIVPAIQGIAYDAMGRLWLWTGSNAVAVKPRYDGYILDPNSLAIYLTDTYDSVSFE
Ga0224531_10162223	F050079	N/A	MIGFYQDAALQDPAVAATPKRFLLPLAGGVKPGTLYLGDPYTASVTAPAAIGAAVVSLDQTFQFPASGSAVVYVPANGSTAASQMVISYTGTTNNSLTGVTGITQTIGDEYLIRPNIVWRSRGNVVFFGSGSDVPNNLLVAFGVPTNPSASCR

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