NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0224531_1008180

Scaffold Ga0224531_1008180


Overview

Basic Information
Taxon OID3300022849 Open in IMG/M
Scaffold IDGa0224531_1008180 Open in IMG/M
Source Dataset NamePeat soil microbial communities from Stordalen Mire, Sweden - C.B.S.T100
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3003
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (83.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Angelobacter → unclassified Candidatus Angelobacter → Candidatus Angelobacter sp. Gp1-AA117(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil → Peatland Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location
Location NameSweden: Norrbotten County, Stordalen Mire
CoordinatesLat. (o)68.3529Long. (o)19.0475Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F017934Metagenome / Metatranscriptome238Y
F074173Metagenome120Y

Sequences

Protein IDFamilyRBSSequence
Ga0224531_10081803F074173AGGAGGMTTDGNAEERRISVFENVAEPAETLGFSHDSVGQSYPQHYPQSSDTLGEPLSIREVARLMGCSAWTVRHSYLPQGLPHLRSGPMGKLVFYRNQVVQWILQQQRKGGR
Ga0224531_10081805F017934AGGAMTEANTQPQPRDLDAAIRERILERVGAINTKLLARLATVADDLDVGGHRAALGGLDGIERQIDTMRSFLLLLS

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