NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0224531_1003334

Scaffold Ga0224531_1003334


Overview

Basic Information
Taxon OID3300022849 Open in IMG/M
Scaffold IDGa0224531_1003334 Open in IMG/M
Source Dataset NamePeat soil microbial communities from Stordalen Mire, Sweden - C.B.S.T100
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5970
Total Scaffold Genes14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)13 (92.86%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Patescibacteria group → Microgenomates group → Candidatus Woesebacteria → Candidatus Woesebacteria bacterium RBG_13_36_22(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil → Peatland Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location
Location NameSweden: Norrbotten County, Stordalen Mire
CoordinatesLat. (o)68.3529Long. (o)19.0475Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F041546Metagenome159N
F046150Metagenome151N
F050107Metagenome145N
F066389Metagenome126N

Sequences

Protein IDFamilyRBSSequence
Ga0224531_10033341F041546GAGGVSRSYTLSATHYAAGWVVPDDDNFNVRTEVNDLAIRYAKLPDGPDKEAAFLKLVECFHGYLIKYTNMVIRGQLPNPTSRVGKDAAEMLKKLLPRGSNPDQAVLSKTCHTLHLAFKTMTTDDIYDAMVMCFLRACRRYDPLYTDKVRQVCEVL
Ga0224531_100333412F046150GAGGMNRPTQPQSSRLRVQAATSAVNAPIECPSCGSIFFIEAQAGMYTTSGAGYRNVNQAPQKVYLCPCGEIMIPSNYSSGVPAGSERDLFVQSLKLAIARRNSTTLDQIAQGTVSLAEHNRLKAQFEELATRFNTWAAGGEVPEPVELATSGEEEAPEEEQASEPAARITMRELGAAPLIATGTRGRSAAAAVQSTGDHKEITSTPATIYTGGARERMKRQGGQ
Ga0224531_10033347F050107GAGGMAGLWFKPVCDDLLGKIHRWWVNYERGEIFSTREWLDREGNKVDKPTRYAYRIPFRPLEIQHLVSILEALAPANSLTKDMKELHESMKHRFINLNLKNRPRLLPTGEWMVTLAWYKADIEEVLTLLLEAKSGKSQTIESLAERQKEQGKELFEV
Ga0224531_10033349F066389AGGMPPTEDLSPSVGMEVTATDVPYGSSYTNGHLYGAHAMGNILSGDLQNPDSAPLAEAFDPRTGTTYHGFRFPGNVVQDPRIPVGTIAMLNSNCHMVLMAPDGRTVECDVRDVMLNVDPARAMSERIALKAGEFGSGTIRGTMRMSPESHKGLMRVFGFADEPKPVIVPEEDLFEDRTW
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