Basic Information | |
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Taxon OID | 3300022849 Open in IMG/M |
Scaffold ID | Ga0224531_1001037 Open in IMG/M |
Source Dataset Name | Peat soil microbial communities from Stordalen Mire, Sweden - C.B.S.T100 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 12844 |
Total Scaffold Genes | 17 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 16 (94.12%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (100.00%) |
Associated Families | 3 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae | (Source: IMG/M) |
Source Dataset Ecosystem |
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Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil → Peatland Microbial Communities From Stordalen Mire, Sweden |
Source Dataset Sampling Location | ||||||||
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Location Name | Sweden: Norrbotten County, Stordalen Mire | |||||||
Coordinates | Lat. (o) | 68.3529 | Long. (o) | 19.0475 | Alt. (m) | Depth (m) | 0 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F012940 | Metagenome | 275 | N |
F016145 | Metagenome / Metatranscriptome | 249 | Y |
F044259 | Metagenome | 154 | N |
Protein ID | Family | RBS | Sequence |
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Ga0224531_10010371 | F044259 | GAGG | MAEISILRPKRNLISIPVNEAVYCESCACVSNSVGGCCGLCGNISVWPLAEFVPQ |
Ga0224531_10010377 | F016145 | GGAGG | MRQSASRIRSLANRYALAEAAAFPGIGTERDRFPSNRRPAAEFRHSFPRFTHQV |
Ga0224531_10010379 | F012940 | AGGAGG | MPDIGPITAVRAATVPNFSKQFILRFALSLLLTSADADVILTFAPSVFSALFNAPILRAAFAILILGLIASLARMWFLTFRDRP |
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