Basic Information | |
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Taxon OID | 3300022849 Open in IMG/M |
Scaffold ID | Ga0224531_1000755 Open in IMG/M |
Source Dataset Name | Peat soil microbial communities from Stordalen Mire, Sweden - C.B.S.T100 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 15470 |
Total Scaffold Genes | 24 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 17 (70.83%) |
Novel Protein Genes | 2 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (100.00%) |
Associated Families | 2 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria | (Source: IMG/M) |
Source Dataset Ecosystem |
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Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil → Peatland Microbial Communities From Stordalen Mire, Sweden |
Source Dataset Sampling Location | ||||||||
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Location Name | Sweden: Norrbotten County, Stordalen Mire | |||||||
Coordinates | Lat. (o) | 68.3529 | Long. (o) | 19.0475 | Alt. (m) | Depth (m) | 0 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F000109 | Metagenome / Metatranscriptome | 2202 | Y |
F003328 | Metagenome / Metatranscriptome | 493 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0224531_100075510 | F003328 | AGGAGG | MGIEGHRKVQVFSSEIVEGARMLLTQKTSEPVPQPGSFMMGAVIRTLLPLLVELRRKGYSLTMLTDLLAEKGIKISPTALSGYMAKFTRPGEEAPVRARRERPQTSTSALQSRGTFVMKPDVTL |
Ga0224531_100075513 | F000109 | AGGA | MPTAKKATARPKRRIVAPVETRTQLRLTVDSKFTKTHFNQLFAVLKIRKKNALAEHIIMNFKTKAAQAQILAFYNGPWLDIPFQSIDTAFVFPLTYEIADELERVGGEILGGVNKSKTFRVMVACFAAVHKLKAPVQSTFA |
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