Scaffold Ga0224531_1000678

Overview

Basic Information

• Taxon OID: 3300022849
• Scaffold ID: Ga0224531_1000678
• Source Dataset Name: Peat soil microbial communities from Stordalen Mire, Sweden - C.B.S.T100
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 16443
• Total Scaffold Genes: 16
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 14 (87.50%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil → Peatland Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location

• Location Name: Sweden: Norrbotten County, Stordalen Mire
• Coordinates
  • Lat. (^o): 68.3529
  • Long. (^o): 19.0475
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004581	Metagenome	432	Y
F014350	Metagenome / Metatranscriptome	263	N
F039906	Metagenome	162	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0224531_100067812	F014350	N/A	MATQVNPLEEHAARAKAGRRGSKAKEQQAVQTTPADTDFPYAGQEADPQQELDMLENQADAPVRGSYLREKDGYEALSPEQKAVCDKDFESYLDRLTRPIEAKEGETRQDAILRAKKEYCATRQEHTAHHREMAKTMLASKINCLNSEYPRNSFSLKNPDVAKEFLATAFYHNAAAAKGLTAFDKDVFAASKKAALREFSVLAASVETGGSATKEFNNTFALSIERPPIGAPSQNLRIAAEPLPEKRQELAAIFGKCAWYHSNQSGRTPEEREQRRAARTKTTQELER
Ga0224531_100067813	F004581	GGAGG	MQHAEIYNGHAGRFQQMARHIELSMTPQHLQKHGGPDPITTNDITLATTLLNSVYGYPAGKQALLALSAGLLPGEERCQTVRGLFRMTAACSEYDQTLTYTLLPLPGREIETANLLKATAAYSIERAGAHSRQIPPSTRHPVQLER
Ga0224531_100067816	F039906	AGG	MQIHSGSFRGTAVTAFAAFAIGVVAWSGHFFTLLGLLALPIVFKCAKGTPQRITRLACYYAGSIWPIMPGAAQFFGNEALLHPLSIVIL