Scaffold Ga0224531_1000076

Overview

Basic Information

• Taxon OID: 3300022849
• Scaffold ID: Ga0224531_1000076
• Source Dataset Name: Peat soil microbial communities from Stordalen Mire, Sweden - C.B.S.T100
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 60834
• Total Scaffold Genes: 79
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 73 (92.41%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil → Peatland Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location

• Location Name: Sweden: Norrbotten County, Stordalen Mire
• Coordinates
  • Lat. (^o): 68.3529
  • Long. (^o): 19.0475
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F039069	Metagenome / Metatranscriptome	164	N
F042873	Metagenome	157	N
F071177	Metagenome	122	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0224531_100007638	F039069	GGAG	MSNLLSRTPFGPMSLYPICIAENLKAINRRSSRWQVLEAFLLSSEGRAERVFEGSSGLVILMAIPDQPGTGAFYIYDEIRRAFSMVNFADQDTFHSSMFDYVVQFYDLGRFVELPKLTLVPKPTVHAADGGSGIVIKGNKVNSNSNRRRSNWYRGPRVPQAVVNAAGRTHMGLVTA
Ga0224531_100007664	F071177	GAGG	LNTHASAEKGTAAIITAAASVEKVRRPRKGSAGQDTTSCKFYIGEIKDGLPVMSKEVSEKDALLDCVRTQRPFMMVQLWKTAEEIEDGRLVIVKTPVVSK
Ga0224531_10000768	F042873	GAGG	MATTSPQFDLKGHLLSLRGLTPKSTKMARFFDANHILIAERPVTAAECWNAGASCWSNFMLADGPTARALGAASVCFI