Scaffold Ga0222674_1000232

Overview

Basic Information

• Taxon OID: 3300022848
• Scaffold ID: Ga0222674_1000232
• Source Dataset Name: Saline water microbial communities from Ace Lake, Antarctica - #866
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 25118
• Total Scaffold Genes: 60
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 36 (60.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → unclassified Candidatus Pelagibacter → Candidatus Pelagibacter sp. TMED203 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Ace Lake
• Coordinates
  • Lat. (^o): -68.4725
  • Long. (^o): 78.188
  • Depth (m): 12

Associated Families

Family	Category	Number of Sequences	3D Structure?
F019560	Metagenome	229	Y
F031263	Metagenome	183	Y
F043088	Metagenome	157	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0222674_100023242	F043088	AGGAG	MKRLDGIYRGYDIFEKDKVWKIELEGKEITTFNKILNEDGKASCMNEIDRIKREDYHERERNIQRVDAQVKATRDGGV
Ga0222674_100023255	F019560	AGGA	MTKVKIKFSVITPCEKEYNIVDQELWDFGKDRFKELAKSEDCQEIFSDERIYGLEEIEDSFYEDSPNREVHKVENLVIDGKNVWY
Ga0222674_100023257	F031263	N/A	MKTVILYLIVILNNGNDYELRKIISYKELSCFNWYEKNIEFRNNNSNKYNDLYVNGYICQYQKGE