NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0222687_1056990

Scaffold Ga0222687_1056990


Overview

Basic Information
Taxon OID3300022844 Open in IMG/M
Scaffold IDGa0222687_1056990 Open in IMG/M
Source Dataset NameSaline water microbial communities from Ace Lake, Antarctica - #1163
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)724
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Ace Lake
CoordinatesLat. (o)-68.4725Long. (o)78.188Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F039342Metagenome / Metatranscriptome164Y
F068214Metagenome125Y

Sequences

Protein IDFamilyRBSSequence
Ga0222687_10569902F068214N/AMSLHHNTGMIQPNTNNIIPAGKYIYTDETFQLEPPKYVQGESFPLRGKELVPAHFSYGHQISDFTLVAGGQPTAMNYNSYIYNALTGFV
Ga0222687_10569903F039342N/AMSYNLDTPFSSQVIFLNSKNSNFKSIDGQGEYSYNFQTPIQLPNNCDMLISVTDAQIPNIIPNVNSTNNKISFSVPTFSMFFTIT

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