Scaffold Ga0222687_1008904

Overview

Basic Information

• Taxon OID: 3300022844
• Scaffold ID: Ga0222687_1008904
• Source Dataset Name: Saline water microbial communities from Ace Lake, Antarctica - #1163
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2125
• Total Scaffold Genes: 2
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Ace Lake
• Coordinates
  • Lat. (^o): -68.4725
  • Long. (^o): 78.188
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F030992	Metagenome	183	Y
F052207	Metagenome	143	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0222687_10089041	F052207	N/A	MSSVSDHIQLMKSQENKYDSVFNKREWLSINDTTTQYDQGTSIIETTSLSNNSKFLDYNSGYLSVPLLVTLTSNASAITGIADTGVLPYTKSVGFKQSFLSMINSITVDLNGQPMVQQNQLIDMYNHFRLLTSESWTSQNRWSSIGFYPDVAEVAGFSTADTKYAPAGQPANNDTLNLGLSERLGYILDDAGRTFSGEVESVLSNLISKTELAKLYVSHVSNLTAGTADVKSPVVQYSVKATIMLKDIHPLFEVMPISKSLNFKIQIFWNNSVVTATHDGTDWTSQSSQYRAYNGTLPLMLNNFDDGFAGSPAGTLRASVYVGDTCHDSTQKSVTNNGLSTGGVGKQVELWVPAYQMLPDVEMSYAQNHLRDVSYFDYYQFSLKNIASGESFNHLVSNGISNLKAVLIVPMLNSLNNNVNAFDDGLPQLMAHINNFNVLVGGANVLHQDSRYTYQQFNNEFFNEFGVNGNQSTGLGSSLIDFKGWLKKPYYYVNCSRVPMEQQKAYRSLQIKGTNSSSLAMDYVIFALYEKNFKLDVISGNVEKLD
Ga0222687_10089042	F030992	N/A	MNITLDLSKGQLSKLRNGHGIRINPTMFGSGVDLIIDPMTYHNMAKKLDKGKGVVIKMGSNEIEMNKMEGTGLFAGAGNKSGKISRHKKATKWRDFSNDTARMGIDTAKYGYEQYQEAVNPLKSKMKKLFGGELESESE