Scaffold Ga0222631_1010502

Overview

Basic Information

• Taxon OID: 3300022843
• Scaffold ID: Ga0222631_1010502
• Source Dataset Name: Saline water microbial communities from Ace Lake, Antarctica - #5
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1588
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Pelagibacter phage HTVC034P (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Ace Lake
• Coordinates
  • Lat. (^o): -68.4725
  • Long. (^o): 78.188
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F042573	Metagenome	158	Y
F077795	Metagenome	117	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0222631_10105024	F077795	AGG	METINIEDQCLLYFFYNKKEKVYIGETSKGYGRFYQHKDKKFDKHNVKYISGKKLNFINNEYFRKYYELRLINRFKPKYNKEKTTAPTLNDFICKMFLWYENPNPTFINPLTAYNQIKYNKYFEYRTKQRRIKKVLNQYTNVWKNLDMSKKLYIDGQNAFSFLINETMKPSNNYSIKFTPRKERLHN
Ga0222631_10105025	F042573	N/A	IFDEHDDSIELKKLRKENNQLKKTIDIIQTENDIKDYEIRILKERLKEKK