Scaffold Ga0222631_1006361

Overview

Basic Information

• Taxon OID: 3300022843
• Scaffold ID: Ga0222631_1006361
• Source Dataset Name: Saline water microbial communities from Ace Lake, Antarctica - #5
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2235
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (75.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Ace Lake
• Coordinates
  • Lat. (^o): -68.4725
  • Long. (^o): 78.188
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F022997	Metagenome	212	N
F059682	Metagenome	133	N
F098756	Metagenome	103	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0222631_10063611	F059682	GAG	VQQSIESKRSQQAADQGLARDLVYSYKWQAEKAPEWFKGVMDKLAKKYGQKYADDIRALMTLEKNRK
Ga0222631_10063616	F022997	AGGAG	MAKLIDFPIGLNEGESRLELDPDAVLTGAVGKLTEVVIVGYEADGSLYFASTRANGPDVLWLLKQAEQRLLAIEREMRT
Ga0222631_10063618	F098756	N/A	HNALAMLVKGEARRKELDVLISALNTCEALVLMGFGTEYAFVAKNGLDALLEVCKRGMRTDHYILKRAEMQTLDEAMQLHDEQLEIVTVGELDRSQRIVRDVLKLKKAKVIDDKENVK