Scaffold Ga0222631_1001462

Overview

Basic Information

• Taxon OID: 3300022843
• Scaffold ID: Ga0222631_1001462
• Source Dataset Name: Saline water microbial communities from Ace Lake, Antarctica - #5
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5679
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Sphingobacteriia → Sphingobacteriales → Sphingobacteriaceae → Pedobacter → unclassified Pedobacter → Pedobacter sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Ace Lake
• Coordinates
  • Lat. (^o): -68.4725
  • Long. (^o): 78.188
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012281	Metagenome	282	Y
F052207	Metagenome	143	Y
F061579	Metagenome	131	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0222631_10014623	F052207	N/A	MFYNYIMSSVSDHVQLMKSQENKYDSVFNKREWLYINDTTTQYDQGTSIIETTSLSNNSKFLDYNSGYLSVPLLVTLTSNVSAITGIADTDTLPYTKSVGFKQSFLSMVNSITVDLNGQPMVQQNQLIDMYNHFRLLTSESWNTQNRWSTIGFYPDVAESAGFSTANSIYAPAGQPANNDTLNLGLYERLGYILDDAGETFSSVADSALSNLISKTEMAKLYISHVSNLTAGTADVKSPVVQYSVKATIMLKDLHPLFEVMPISKSLNFKIQIFWNNSVVTATHDGTDWSAQSSQYRAYNGTLPLMLNNFTDGFTGSPAGTLRASVYVGDTCHDSTQKSVTNNGLSTGGVGKQVELWVPAYQMLPDVEMSYAQNHLRDISYFDYYQFSLKNIGSGESFNHLVSNGISNLKAVLIVPLLHSLNNNVNAFDDGLPQLMGHINNFNVLVGGSNVLHQDSRYTYQQFNNEFFHEFGVNGNQSSGLGSSLIDFKSWLKKPYYYVNCSRVPMEQQKAYRSLQIKGTNSSSLAMDYVIFALYEKSFKLDVISGNIEKLD
Ga0222631_10014624	F061579	N/A	MNITLDLSKGQLSKLRNGHGIRINPTMLGSGTDLIIDPMTYHNMAKKMDKGKGVVIKMGSNEIQMNKMEGTGLFAGSGNESGKISRIKKANKWRDFSVDTAKQGIDVAKYGYDKYKEATNPVQSKLKKMFGFGDMEEDVEGGKISMSDIKKSYNKNVKNTKLGKAIRETAEKGLGEVYDKGVVKIGNTKHFSGIADVLKKGKVKNVSKLTQMSGLGLRLQGEGLTMGKGLTMGGKCCGCGMMNDKFLFQNQSL
Ga0222631_10014626	F012281	N/A	MLSNHDIDELITKMNIPNFKGCYYKDKLKKIQPNSSYIINLNSELDESGKRNTGSHWTCLVTDDMCRAIYFDSYGENAPNEIRNLLKCNQYKIGHTSKNIQSLMSNLCGFFCLAFIYFLSVSKFRTGNIINDASIFLDLFEDLDLTDDVYKNEFILSLFFTDKKSKSLLLGNNNVNLNKENTIDNRFNIEDKKIRS