NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0222631_1001095

Scaffold Ga0222631_1001095


Overview

Basic Information
Taxon OID3300022843 Open in IMG/M
Scaffold IDGa0222631_1001095 Open in IMG/M
Source Dataset NameSaline water microbial communities from Ace Lake, Antarctica - #5
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6812
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (27.27%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Balneolaeota → Balneolia → Balneolales → Balneolaceae → Balneola → unclassified Balneola → Balneola sp.(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Ace Lake
CoordinatesLat. (o)-68.4725Long. (o)78.188Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F079340Metagenome116N

Sequences

Protein IDFamilyRBSSequence
Ga0222631_10010955F079340N/AMTINENDNQESQTNYWDQVETAPNFNKGLTGKKLISSGHIKAEKPGETDWFRVYGEKATDLTPGLLVDVKVDVIDQKFLVIGPEEFKQQIVDGFKKARSVYLAYYTTSSGKQGVWPVTVPQQDQHGNINSYVQTAFTIMERAQHSWTQMKTNQGDRVYDGWIAEKTDQEMFGDPQFLLTPKEANMKAFNDRVIAPDTYESNPYVMRVLNARSIDTGIEKEKI

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