Scaffold Ga0222632_1017837

Overview

Basic Information

• Taxon OID: 3300022842
• Scaffold ID: Ga0222632_1017837
• Source Dataset Name: Saline water microbial communities from Ace Lake, Antarctica - #46
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1227
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Myoviridae sp. ctj3P51 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Ace Lake
• Coordinates
  • Lat. (^o): -68.4725
  • Long. (^o): 78.188
  • Depth (m): 12

Associated Families

Family	Category	Number of Sequences	3D Structure?
F018451	Metagenome	235	Y
F026714	Metagenome	197	N
F043088	Metagenome	157	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0222632_10178372	F018451	GGAGG	MSKFIDIQSHNPKAVLPKDYKMNKIQHSPKVLEVKNGMLGFEFNGTYIVDPTLDETARFPVSAKTYYKISARDRDRMIKANIKV
Ga0222632_10178373	F043088	AGGAG	MKRLDGIYRGYSIFEKDKVWKIELEGKTITTFNKILNVDGKASCLTEIDRIKREDYHERERNVQRVDAQVKATRDGGVXVNL
Ga0222632_10178374	F026714	AGGAG	MASTYKKLTIYLNQEQENVLKDFDLKRIRSEQFDLLHYTVGIISSKLDDTSNKMITDVDPNKCDPATLQYSSKTIG