Scaffold Ga0222632_1008839

Overview

Basic Information

• Taxon OID: 3300022842
• Scaffold ID: Ga0222632_1008839
• Source Dataset Name: Saline water microbial communities from Ace Lake, Antarctica - #46
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2036
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Ace Lake
• Coordinates
  • Lat. (^o): -68.4725
  • Long. (^o): 78.188
  • Depth (m): 12

Associated Families

Family	Category	Number of Sequences	3D Structure?
F022908	Metagenome / Metatranscriptome	212	Y
F025320	Metagenome / Metatranscriptome	202	Y
F064884	Metagenome / Metatranscriptome	128	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0222632_10088391	F064884	N/A	VRQYGNIVGAGPLFDTNASKTYIVEGTDMFVGAPASSGGTFTFTESGADGTSVGTLLAALKALGTVDGIDLNDSSTTAKIENLEL
Ga0222632_10088393	F025320	AGGAG	MTTKINPTKANTTDHLSGKTITAVTVDFAVDGTDFSDTEMGPLGAVQAALATMTQEATPIIITKLRSDGSNDGQVFDMVFEGEFGTDTYDGSNSEAFAAYLQTVIRLLTSVGAGSVNLNAATVVAATAASF
Ga0222632_10088394	F022908	N/A	MPSHLDEAIKIITSPDSQLRDETPRIYAMPKDEHMPKGFTNLKRMRYLSHDVCGGRNIKRWLWRDYSPEIILQQPPFDRYEDQSEVFTLIRHPKERWWSGIKDMFYFMPWYGWWANDKIMAQWPHFGRGTLRYHDIMEQIKPQHLIKCDDGLNDRIIKFAKDNGLLCFGNIPHEKALRHTKPDIKKLEDKGVKELKAWLKENPDRQQQLDDYLEPDWQYWNRVEEQD