Scaffold Ga0222632_1000438

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

x

This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK

Scaffold Ga0222632_1000438

Scaffold Ga0222632_1000438

Overview

Basic Information
Taxon OID	3300022842 Open in IMG/M
Scaffold ID	Ga0222632_1000438 Open in IMG/M
Source Dataset Name	Saline water microbial communities from Ace Lake, Antarctica - #46
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	22610
Total Scaffold Genes	44 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	28 (63.64%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location
Location Name	Antarctica: Ace Lake
Coordinates	Lat. (^o)	-68.4725	Long. (^o)	78.188	Alt. (m)		Depth (m)	12
Location on Map

Zoom:	Powered by OpenStreetMap^©

Associated Families

Family	Category	Number of Sequences	3D Structure?
F033961	Metagenome	176	Y
F043088	Metagenome	157	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0222632_10004383	F043088	AGGAG	MKRLDGIYRGYDIFEKDKVWKIELEGKTISTFDKIEDVDGKASCMNEIDRIKREDYHERERNIQRVDAQVKATRDGGV
Ga0222632_100043840	F033961	AGGAGG	MNKEEAINILLEHAIDSCEKIKIRKESGHTEEVADSLTAAILFLERDRNKNKVDAKVEITGIQFNLSKGI

© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.