Scaffold Ga0222644_1000634

Overview

Basic Information

• Taxon OID: 3300022841
• Scaffold ID: Ga0222644_1000634
• Source Dataset Name: Saline water microbial communities from Ace Lake, Antarctica - #291
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9269
• Total Scaffold Genes: 28
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 23 (82.14%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Ace Lake
• Coordinates
  • Lat. (^o): -68.4725
  • Long. (^o): 78.188
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004220	Metagenome	448	Y
F019311	Metagenome	230	Y
F019560	Metagenome	229	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0222644_100063410	F019560	AGGAG	MQKVKIKFSVITPCEKEYEIVDQELWDFGKDRFKELAKSDDSQEIFSDERIYGLKVIEDSYYEDSPNREVHKIENIVIDGKNQWY
Ga0222644_100063411	F019311	AGGAG	MTKYVKIKDCVVGKKYRFEEHEHTVTSYDYNYSYMTGTCVTNQVYTDREKVFGEYEQLIEIKLHMIRPELEGEYDNKLMFYFPHDNEIYNKVKVVEYE
Ga0222644_100063419	F004220	GGAG	MVEKDKVDWCYYFKSIDRWIRVCTKDMNEGFSVFTKQTRVKEHYKKMADTGVEFYTCDDDDLDKEYGMYYGNLEFDPLDIMESNSGHTKMFYKENNKWQPL