NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0224549_1025087

Scaffold Ga0224549_1025087


Overview

Basic Information
Taxon OID3300022840 Open in IMG/M
Scaffold IDGa0224549_1025087 Open in IMG/M
Source Dataset NamePeat soil microbial communities from Stordalen Mire, Sweden - 717 P3 1-5
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)815
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil → Peatland Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location
Location NameSweden: Norrbotten County, Stordalen Mire
CoordinatesLat. (o)68.3535Long. (o)19.0472Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001473Metagenome / Metatranscriptome688Y
F019896Metagenome / Metatranscriptome227Y
F072572Metagenome / Metatranscriptome121N

Sequences

Protein IDFamilyRBSSequence
Ga0224549_10250871F072572AGGAGMASSATKMANEPEGAGEERQPDVQLQDVLFSALASSVCYWTTIFLLAIVGAYLIQWWLTHPGPYPAPANDPWGITTPPWLILPLAPIGVVGSLGHAVWCALQG
Ga0224549_10250872F001473GAGMESEYQTVGQMYERLRLMIRQRNDTGFRLAMTDAVLEPRNPFEPASKRRPKSVVSITLILVLVLALIFLYFSLHHAT
Ga0224549_10250873F019896N/ARLKTYDAPIPVKIRQCEPGVAEVGPGEALIGLIALQLPPVNPDAKKTQPTVLKILFPIDRAGNLTATLVL
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