Scaffold Ga0224549_1000004

Overview

Basic Information

• Taxon OID: 3300022840
• Scaffold ID: Ga0224549_1000004
• Source Dataset Name: Peat soil microbial communities from Stordalen Mire, Sweden - 717 P3 1-5
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 20570
• Total Scaffold Genes: 16
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (81.25%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil → Peatland Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location

• Location Name: Sweden: Norrbotten County, Stordalen Mire
• Coordinates
  • Lat. (^o): 68.3535
  • Long. (^o): 19.0472
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F069096	Metagenome / Metatranscriptome	124	N
F092430	Metagenome / Metatranscriptome	107	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0224549_100000413	F092430	AGGCGG	MSEPDEPDEISRELDAIFAEFFGPPTEMDLRGVDPATFALGLSYGFDSWQHARVVANNRRHIATATRHWAEHHPSAEFLSHVVGTDESAVRHRELLDRAHPGCAACEEQLERLAGFGLDRVDPGAPPDDIDLDWLAFQPMEVVRRLDSERQTARPLHIRGRAEDRSITAEPYGGRDWRITVRDPRVHHATVWIGWTGRQITQHAAIFENDLAEIDAEAPEEGARPQRVRIRITNPPVPP
Ga0224549_10000043	F069096	AGG	MTSQHGSAAGRPVLGPAGPNRRTQEGAFQAMRPLSAPADVLAQPIHLPYPPELPDGLPARPRVLQLTDADAVSRGLADGTRRDRAPDREVRACLELVWATARTIDPGARVVNAASSATATRHLDVMTASGGNTWLVRRGLDGADRALLEELDHLTDMHQMLHQPGRRRPVGPADLVILVAQDHIFARSIRRLRLLGVPTWLLVPGRSVARELFTTACAVTFVGPRPRSR