Scaffold Ga0222649_1023468

Overview

Basic Information

• Taxon OID: 3300022839
• Scaffold ID: Ga0222649_1023468
• Source Dataset Name: Saline water microbial communities from Ace Lake, Antarctica - #337
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 781
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Ace Lake
• Coordinates
  • Lat. (^o): -68.4725
  • Long. (^o): 78.188
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002594	Metagenome / Metatranscriptome	545	Y
F011527	Metagenome	290	Y
F024421	Metagenome	206	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0222649_10234682	F011527	N/A	MLVYFQFWRCGYYAKGLVEADNLDAASKALWAEHVGTFKWEDQTKDQPENANYLTIEEYKYERSSDGKTEPKDEARSQVG
Ga0222649_10234683	F024421	AGGAG	MSEALMEKLNQKMKLEAKWASELLANGAVTVEMVNISKEVKTVEREIKEVVEHK
Ga0222649_10234684	F002594	N/A	MAKIPISRLNSAPEKYAANDFNQLIEDLQDMVKILNSTYPKDVNDERERQVWLLGG