Scaffold Ga0222649_1002685

Overview

Basic Information

• Taxon OID: 3300022839
• Scaffold ID: Ga0222649_1002685
• Source Dataset Name: Saline water microbial communities from Ace Lake, Antarctica - #337
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3887
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (85.71%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Ace Lake
• Coordinates
  • Lat. (^o): -68.4725
  • Long. (^o): 78.188
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F017336	Metagenome / Metatranscriptome	241	N
F053834	Metagenome	140	Y
F065935	Metagenome	127	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0222649_100268511	F053834	AGGA	MIDMADMSGKILWTKGREAGVELERNRIHKSIYGYFRLFDGASNRAHKISEAELMTLIQTEEQNG
Ga0222649_100268512	F065935	GGAGG	MDDEISNKLYWTLGYEAGVELERERIIKVFQAKEAKRTIIEALEYPYTAQELEDTIREGQNDR
Ga0222649_10026859	F017336	GGAG	MTRACVISHKSPMEANYGLLCAMCYDGLRSALQGAPNALQHLREIYVMRSPMELDTPKPLKKDPPAPFNLDAWQLAEDMWQALTGGYIPVKWNHFQIYGKAKEVCQALHQDIDNLVNRKEVIYLMPLVKTLGQALYRYPLEEKSRTTLLPCPSCNLKTVYSPPSEFGDDLQVKCHSCGFVIPPEKMAFYANLAERERA